CDS

Accession Number TCMCG042C44112
gbkey CDS
Protein Id XP_016476248.1
Location complement(join(88362..88499,88591..89001,94245..94347,94462..94526,94633..94740,97358..97450,97536..97583,98002..98100,98246..98362,98482..98535,99419..99511,100395..100475,101064..101169,101271..101305,101856..101942,102129..102206,102281..102349,102466..102564,102819..102888,102981..103321,103408..103465,103562..103614,107604..107673,107877..107941,114413..114556,114691..114987,115105..115170,115694..115726))
Gene LOC107797839
GeneID 107797839
Organism Nicotiana tabacum

Protein

Length 1026aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016620762.1
Definition PREDICTED: pre-mRNA-processing protein 40A-like isoform X2 [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category A
Description pre-mRNA-processing protein 40A
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12821        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006928        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007010        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008360        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016363        [VIEW IN EMBL-EBI]
GO:0016477        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0022603        [VIEW IN EMBL-EBI]
GO:0022604        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032465        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0040011        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048870        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051302        [VIEW IN EMBL-EBI]
GO:0051674        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070064        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCAGTAATCCTCCGCCATCTGGTCCACAGCCTCTTTGGCCTCCTTCAGTTGGATCCACACCACCTCAAGGTTTTGGTTCATCATTTCCCATGCAACAAGGCCAGCCCTTTGCTTCATCAATTTCAGCCTCTCCACAGTATCGCCCTGTTGGACAAACATCAAATGCTGGAATGCCTCCTGGTCATCATAGTCAAATACCCCAGTTTTCTCAACCAATGCAACAGTTTCCCCCGAGGCCCAATCAGCCTGGCCATGGTATACTTTTATCTCAGGCAATTCAGATGCCATTTATCCAATCAAGTATGCCACAACCTCAACAAGTCATTCCGCCTTTGAATAGTCACATGCCTGGTGTTAGTGGTGCTGGAAATCCATTTTCATCATCATATACGGTTCAATCGTCATCCCAAATGCATGTTCCTTCTTTCCCTTCGGGGGGGCAACCTTGGCTGTCATCTGGAAGTCAAAACACACCAGTGACTGCCCCTACTTTACTGACCAATCAGCAATTGTCAGCTATAGCTCCATCCGTTCCGGCGGGCACAGCTTCACCACAGAATGCGTCTGACTGGCAAGAGTATGAAGCTGCTGATGGGAGACGATATTACTACAATAAAATTACAAAGCAATCCAGCTGGGAGAAGCCTTTGGAGCTGATGACACCTTTAGAGAGAGCTGATGCGTCGACGGTATGGAAAGAATTCACAACTGCAGATGGTCGAAAGTATTACTACAACAAAGAAACAAAGCAGTCTAAGTGGACAATACCTGAGGAACTAAAGTTGGCTCGTGAACTGGCGGAAAAATCTGCTGGTCAAGTAGTTCAGACCGGAGCAAGCACAACTTCTGGTGTGCAAGTCACTGCAGCTGTAACTTCAACAGAACAACCATCTGCTGTCACCCCGGTTAGCTTCACCCCTTCTTCAACGGTTTCTGGAGTAGCTTCAAGCCCTGTTCCAGTTACATCTGCTGTTTCTGATCATGCTTCACCTCTGGTGGTTTCTGGATCATCAGCCATTCCTGCTGTGACCCCTGCGATGCCAAGTTCATCTGGTGTCTCTTCACCCGCTGTTTCAGGGAGTACAGGATCTGCTGCTCTAGCTAATGCCAGTCAGACACAAATGAGTGGCTTTGAAAATTTATCTCCGCAAGTTTCTAGTTCTTTAAGTGGAGCTTCTATTCAGGATATTGAGGAGGCAAAGAAGGGCATGGCAGTTGCTGGGAAGGTTAATGTGGTACCTGCAGAGGAGAAAACAACAGAAGAAGAACCTTTTCTATATGCGACCAAGCAGGAGGCTAAAAATGCGTTCAAAGCGCTGCTAGAGTTTGCTAATGTTGAATCTGATTGGACATGGGAGCAGACAATGCGAGTAATAATCAACGATAAGCGATATGGCGCTCTGAAAACTCTTGGTGAGCGGAAACAGGCATTCAATGAGTACTTGATGCAAAGGAAGAAACAGGAGGCTGAGGAGAGGCGCCATAGACAAAGAAAGGCAAAAGAAGAATTCACAAAGATGTTAGAGGAGTCCAAGGAACTCATTTCATCTACTAGATGGAGTAAGGCAGTAACCATGTTTGAGGATGATGAACGGTTCAAGGCCGTTGAACGAGAGGCTGATCGTGAAGATCTCTTCAGGAACTACTTGGTGGATCTGCAGAAAAAGGAGAGGGCAAAGGCTCAAGAGGAGTATCGACAAAATAGATTGGAGTACAGACATTTTTTGGAGACTTGTGGCTTTATCAAGGTAGATACCCAGTGGCGCAAAGTCCAAGATCTTCTGGAAGATGATGAAAGATGTTTGCGCCTTGAAAAAATCGATCGTTTAGATATTTTCCAGGAATACATCCGTGACCTGGAGAAGGAGGACGAAGAACAGAGAAAATTGCAAAAGGAACAATTGAGGCGCACAGAGCGTAAGAACCGGGATGCATTTCGAAAGATGATGGAGGAGCAAATCACTGCAGGCACGCTTACTGCGAAAACATCTTGGCGTGATTATTGTCAGATGGTTAAGGAGTCTGTGGCTTATCAGGCTGTTGCATCAAACACTTCTGGTTCGACACCAAAGGATTTGTTTGAAGATGTCGTTGAAGAGTTGGAAAAACAGTACCATGAAGACAAGATTCGAGTAAAAGATGTAGTTAAGTCAGAAAAGATCACGATCTCATCAACATGGACATTCGAAGACTTTAAAGCTACTATTTTGGAAGGAATTGGTTCCCCATCCATTCATGATGTTAATCTACAGCTCATTTTTGAGGATCTAATTGAGAGAGCAAAGGAGAAAGAAGAAAAAGAAACTAAAAAGCGTCAAAGGCTTGCAAAAGATTTCACTGACAAGCTTAGTACCATTAAGGAAATAACTGCTTCCTCTAGTTGGGAGGAGTGCAAAGAACTTGTGGAGGACACCTCAGAGTTCAGAGCTATTGGTGAAGAAACAATCTCAAGGGCAGTCTTTGAGGAATACGTTGCATGGTTGCAGGAGAAGGCAAAGGAAAAAGAACGCAGACGAGAGGAGGAAAAGGCCAAAAAGGAGAAAGAAAAAGAGGAAAAAGAGAAGAGAAAGGATAAGGAGAGAAGGGAAAAAGAGAGAGAGAAGGAAAAAGAGCGTGACAAGGAAAAAGAAAGGGGAAACGAACGAGCAACAAAAGATGAGGCAGATAGCGAGAGTATGGATGTTACAGATAACTATGAGCCCAAAGAAGAGAGAAAAAGAGAAAAAGACAGAGAGAGGAAACATCGGAAGCGACACCATATCTCTAACGATGAGGTGACTTCTGACAAGGATGAGAAAGAGGAACCTGAAAGAGACAAGGAGAGGAAACACCGGAAGCGACACCATAGCTCTAACGATGAGCTGGCATCTGACAAGGACGAGAAAGAGGAATCTAAAAGGTCCCGCCGACATAGCAGTGATCGTAAAAAGTCAAAGAAGCTTGCACACTCACCTGAATCCGATGGTGAAAGTCGGCATAAAAGACACAGAAGAGATCATAGGGATGGATCACGTCGAAATGGTGGTGGTTATGAAGAGTTAGAAGATGGGGAGCTTGGTGAAGATGGAGAAAGTTGA
Protein:  
MASNPPPSGPQPLWPPSVGSTPPQGFGSSFPMQQGQPFASSISASPQYRPVGQTSNAGMPPGHHSQIPQFSQPMQQFPPRPNQPGHGILLSQAIQMPFIQSSMPQPQQVIPPLNSHMPGVSGAGNPFSSSYTVQSSSQMHVPSFPSGGQPWLSSGSQNTPVTAPTLLTNQQLSAIAPSVPAGTASPQNASDWQEYEAADGRRYYYNKITKQSSWEKPLELMTPLERADASTVWKEFTTADGRKYYYNKETKQSKWTIPEELKLARELAEKSAGQVVQTGASTTSGVQVTAAVTSTEQPSAVTPVSFTPSSTVSGVASSPVPVTSAVSDHASPLVVSGSSAIPAVTPAMPSSSGVSSPAVSGSTGSAALANASQTQMSGFENLSPQVSSSLSGASIQDIEEAKKGMAVAGKVNVVPAEEKTTEEEPFLYATKQEAKNAFKALLEFANVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLMQRKKQEAEERRHRQRKAKEEFTKMLEESKELISSTRWSKAVTMFEDDERFKAVEREADREDLFRNYLVDLQKKERAKAQEEYRQNRLEYRHFLETCGFIKVDTQWRKVQDLLEDDERCLRLEKIDRLDIFQEYIRDLEKEDEEQRKLQKEQLRRTERKNRDAFRKMMEEQITAGTLTAKTSWRDYCQMVKESVAYQAVASNTSGSTPKDLFEDVVEELEKQYHEDKIRVKDVVKSEKITISSTWTFEDFKATILEGIGSPSIHDVNLQLIFEDLIERAKEKEEKETKKRQRLAKDFTDKLSTIKEITASSSWEECKELVEDTSEFRAIGEETISRAVFEEYVAWLQEKAKEKERRREEEKAKKEKEKEEKEKRKDKERREKEREKEKERDKEKERGNERATKDEADSESMDVTDNYEPKEERKREKDRERKHRKRHHISNDEVTSDKDEKEEPERDKERKHRKRHHSSNDELASDKDEKEESKRSRRHSSDRKKSKKLAHSPESDGESRHKRHRRDHRDGSRRNGGGYEELEDGELGEDGES